#GPU FOR LARGE CYTOSCAPE NETWORKS CODE#

Multiple experiments can be used to predict an interaction between proteins, and the outcome of these have been continuously deposited in public resources such as IntAct.

#GPU FOR LARGE CYTOSCAPE NETWORKS CODE#

The source code is freely available for download at. Moreover, as a web resource, PINV simplifies sharing and publishing, activities which are vital in today’s research collaborative environments. The resultant tool provides an attractive view of complex, fully interactive networks with components that allow the querying, filtering and manipulation of the visible subset. We demonstrate the use of PINV with multi-organism interaction networks for a predicted target from Mycobacterium tuberculosis, its interacting partners and its orthologs. We developed PINV as a set of components that follow the protocol defined in BioJS and use the D3 library to create the graphic layouts. We have created a Web-based Protein Interaction Network Visualizer: PINV, an open source, native web application that facilitates the visualization of protein interactions ( ). Given the advances that web technologies have made recently it is time to bring these interactive views to the web to provide an easily accessible forum to visualize PPI. However, there is still no native web tool that allows this data to be explored interactively online. There are several tools that allow the exploration of this data, providing different methods to visualize protein network interactions. Visualization of large data sets is a well known strategy to make sense of information, and protein interaction data is no exception. These numbers exemplify the volume of data that research on the topic has generated. As of October 2013, Homo sapiens had over 170000 Protein-Protein interactions (PPI) registered in the Interologous Interaction Database, which is only one of the many public resources where protein interactions can be accessed. The study of these interactions has provided insight into the functioning of an organism’s processes. Interaction between proteins is one of the most important mechanisms in the execution of cellular functions.

Gpu for large cytoscape networks